STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV68357.1LysM domain-containing protein; PFAM: LysM domain. (95 aa)    
Predicted Functional Partners:
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
  
 0.745
AEV70507.1
PFAM: FlgN protein.
  
     0.710
lexA
SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
  
  
 0.649
AEV70633.1
Hypothetical protein.
  
     0.644
AEV67245.1
Copper amine oxidase family protein,LysM domain-containing protein,SH3 domain-containing protein; PFAM: Copper amine oxidase N-terminal domain; Bacterial SH3 domain; LysM domain.
  
     0.631
AEV68358.1
PFAM: TadE-like protein.
 
     0.623
AEV67880.1
Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
  
   
 0.617
AEV68829.1
PFAM: Bacterial protein of unknown function (DUF896).
  
  
 0.589
AEV68359.1
Hypothetical protein; Manually curated.
 
  
 0.588
AEV70451.1
Hypothetical protein; Manually curated.
  
   
 0.563
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.