Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV68510.1Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (506 aa)    
Predicted Functional Partners:
AEV68511.1
Hypothetical protein; TIGRFAM: DNA binding domain, excisionase family.
 
     0.891
AEV67106.1
PFAM: Bacterial regulatory proteins, tetR family; TIGRFAM: probable dihydroxyacetone kinase regulator.
  
  
 0.619
AEV66986.1
DNA primase; PFAM: CHC2 zinc finger.
  
   
 0.617
AEV69975.1
Hypothetical protein.
  
     0.582
AEV68512.1
PFAM: DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.575
AEV69974.1
PFAM: Bacterial regulatory proteins, tetR family.
  
  
 0.571
AEV68762.1
PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated protein; manually curated.
  
    0.549
AEV67009.1
Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family.
  
  
 0.544
AEV68765.1
PFAM: RAMP superfamily.
  
     0.524
AEV68764.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily.
  
     0.523
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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