STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV68537.1Putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon; PFAM: Protein of unknown function (DUF342); manually curated. (541 aa)    
Predicted Functional Partners:
AEV70537.1
TIGRFAM: flagellar operon protein TIGR03826.
 
     0.748
AEV69208.1
Hypothetical protein.
 
     0.741
AEV67819.1
Putative inhibitor of MCP methylation, CheC; PFAM: CheC-like family.
  
     0.735
AEV68545.1
Putative glycosyltransferase; PFAM: PilZ domain.
 
    0.728
AEV68756.1
Putative inhibitor of MCP methylation, CheC; PFAM: CheC-like family.
  
     0.722
AEV70465.1
PFAM: Protein of unknown function (DUF327).
  
     0.718
AEV68547.1
PFAM: SRP54-type protein, GTPase domain; TIGRFAM: flagellar biosynthetic protein FlhF.
 
   
 0.706
AEV68538.1
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family.
 
    0.692
AEV68558.1
Uncharacterized protein, possibly involved in motility; PFAM: Flagellar protein (FlbD).
 
   
 0.685
AEV68556.1
PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; manually curated.
 
     0.683
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.