STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV68644.1RCC1 domain-containing protein, alpha-tubulin suppressor; PFAM: Regulator of chromosome condensation (RCC1) repeat; Dockerin type I repeat. (819 aa)    
Predicted Functional Partners:
AEV68222.1
Subtilisin-like serine protease; PFAM: Subtilase family.
 
 
 0.693
AEV69691.1
PFAM: Putative peptidoglycan binding domain; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
 
 
 0.657
AEV69257.1
RHS repeat-associated core domain protein; PFAM: RHS Repeat; Protein of unknown function (DUF1557); TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
  
 
 0.650
AEV68943.1
Putative S-layer protein; PFAM: S-layer homology domain.
  
 
 0.552
AEV67948.1
Subtilisin-like serine protease; PFAM: S-layer homology domain; Subtilase family.
 
 
 
 0.539
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.523
AEV69873.1
PFAM: Glutathionylspermidine synthase.
  
     0.479
AEV69814.1
FHA domain-containing protein; PFAM: FHA domain.
  
 
  0.453
AEV68641.1
Hypothetical protein; Manually curated.
 
 
 
 0.450
AEV69197.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
  
 
 
 0.444
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.