STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV68663.1PFAM: Protein of unknown function (DUF322). (182 aa)    
Predicted Functional Partners:
AEV68662.1
PFAM: Small integral membrane protein (DUF2273).
 
     0.927
AEV70418.1
PFAM: Membrane protein of unknown function.
  
     0.764
AEV68664.1
PFAM: Protein of unknown function (DUF322).
 
     0.704
AEV69390.1
Hypothetical protein; PFAM: PRC-barrel domain.
  
     0.611
AEV68671.1
PFAM: Stage III sporulation protein AB (spore_III_AB); TIGRFAM: stage III sporulation protein AB.
 
     0.609
AEV68667.1
PFAM: Stage III sporulation protein AF (Spore_III_AF); TIGRFAM: stage III sporulation protein AF; manually curated.
 
    0.595
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
    0.577
AEV68665.1
Hypothetical protein; Manually curated.
 
    0.539
AEV67136.1
Putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain; PFAM: Ribbon-helix-helix protein, copG family.
  
    0.530
AEV68668.1
PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
 
    0.524
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.