Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV68765.1PFAM: RAMP superfamily. (533 aa)    
Predicted Functional Partners:
AEV68764.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily.
 
  
 0.957
AEV68766.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily.
 
  
 0.957
AEV68762.1
PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated protein; manually curated.
 
     0.950
AEV68761.1
PFAM: CRISPR-associated protein (cas_TM1812); TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated DxTHG motif protein.
 
     0.913
AEV68760.1
PFAM: CRISPR-associated protein (Cas_Cas02710); TIGRFAM: CRISPR-associated protein, TIGR02710 family.
 
     0.878
AEV68772.1
CRISPR-associated protein, Csh1 family; PFAM: CRISPR-associated protein TM1802 (cas_TM1802); TIGRFAM: CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI; CRISPR-associated protein, TM1802 family; manually curated.
 
     0.871
AEV68767.1
Hypothetical protein.
 
     0.850
AEV68768.1
Hypothetical protein.
 
     0.801
AEV68763.1
Hypothetical protein.
       0.792
AEV67440.1
Hypothetical protein.
  
     0.774
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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