Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV68767.1Hypothetical protein. (487 aa)    
Predicted Functional Partners:
AEV68766.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily.
 
 
 0.990
AEV68764.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily.
 
 
 0.987
AEV68762.1
PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated protein; manually curated.
 
   
 0.881
AEV68765.1
PFAM: RAMP superfamily.
 
     0.850
AEV68763.1
Hypothetical protein.
       0.792
AEV68761.1
PFAM: CRISPR-associated protein (cas_TM1812); TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated DxTHG motif protein.
     
 0.691
AEV68770.1
CRISPR-associated protein, Cas5h family; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, subtype I-B/HMARI; CRISPR-associated protein Cas5, N-terminal domain.
 
  
 0.684
AEV68768.1
Hypothetical protein.
       0.670
AEV68760.1
PFAM: CRISPR-associated protein (Cas_Cas02710); TIGRFAM: CRISPR-associated protein, TIGR02710 family.
 
     0.653
AEV68769.1
CRISPR-associated helicase, Cas3 family; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD.
  
  
 0.640
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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