STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV68822.1Hypothetical protein; Manually curated. (65 aa)    
Predicted Functional Partners:
AEV68824.1
PFAM: Tryptophan RNA-binding attenuator protein.
       0.823
AEV68823.1
Hypothetical protein.
       0.773
AEV68977.1
PFAM: Peptidase propeptide and YPEB domain.
  
     0.664
AEV67703.1
Zinc metalloprotease (elastase); PFAM: S-layer homology domain.
  
     0.656
AEV69414.1
Hypothetical protein.
  
     0.621
AEV70422.1
PFAM: YtxC-like family; TIGRFAM: putative sporulation protein YtxC.
  
     0.609
AEV68667.1
PFAM: Stage III sporulation protein AF (Spore_III_AF); TIGRFAM: stage III sporulation protein AF; manually curated.
  
     0.583
AEV68825.1
PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc).
       0.578
AEV68147.1
Hypothetical protein.
  
     0.560
AEV70418.1
PFAM: Membrane protein of unknown function.
  
     0.519
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.