Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV68858.1PFAM: Mycoplasma protein of unknown function, DUF285; Dockerin type I repeat. (541 aa)    
Predicted Functional Partners:
AEV67271.1
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
 
 0.854
AEV68765.1
PFAM: RAMP superfamily.
  
     0.765
AEV68762.1
PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated protein; manually curated.
  
     0.762
AEV67440.1
Hypothetical protein.
  
     0.761
AEV69714.1
Hypothetical protein.
  
     0.758
AEV68764.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily.
  
     0.751
AEV69119.1
Hypothetical protein.
  
     0.727
AEV68512.1
PFAM: DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.
  
     0.719
AEV69368.1
PFAM: CotH protein.
  
     0.717
AEV66784.1
PFAM: Helix-turn-helix.
  
     0.716
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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