STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV69069.1TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies). (901 aa)    
Predicted Functional Partners:
AEV69068.1
Hypothetical protein.
       0.773
AEV69070.1
Hypothetical protein.
       0.623
AEV68200.1
PDK repeat-containing protein; PFAM: Dockerin type I repeat; PKD domain.
 
     0.502
AEV69231.1
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: Phosphopantetheine attachment site; AMP-binding enzyme.
 
  
 0.487
AEV68148.1
PFAM: Fibronectin type III domain.
    0.470
AEV69257.1
RHS repeat-associated core domain protein; PFAM: RHS Repeat; Protein of unknown function (DUF1557); TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
 
   
0.432
AEV69071.1
PFAM: Transposase domain (DUF772).
       0.416
AEV67414.1
CBM6-containing protein,dockerin-like protein; PFAM: Dockerin type I repeat; Carbohydrate binding module (family 6).
 
    0.406
AEV68926.1
PFAM: Protein of unknown function (DUF1557).
 
   
 0.406
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.