Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV69148.1UDP-N-acetylmuramyl tripeptide synthase; PFAM: Mur ligase middle domain; manually curated. (241 aa)    
Predicted Functional Partners:
AEV68785.1
PFAM: CobB/CobQ-like glutamine amidotransferase domain.
  
 
 0.813
AEV70451.1
Hypothetical protein; Manually curated.
  
     0.751
AEV67780.1
Hypothetical protein.
  
     0.745
AEV70635.1
Putative hydrolase or acyltransferase of alpha/beta superfamily; PFAM: PGAP1-like protein; manually curated.
  
     0.724
AEV68408.1
PFAM: Cohesin domain.
  
     0.707
AEV68419.1
PFAM: Flagellar hook-length control protein FliK; manually curated.
  
    0.676
AEV69808.1
PFAM: Cohesin domain; manually curated.
  
     0.665
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.654
AEV70210.1
Hypothetical protein.
  
     0.647
AEV68857.1
PFAM: Copper amine oxidase N-terminal domain.
  
     0.646
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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