STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV69857.1Hypothetical protein. (654 aa)    
Predicted Functional Partners:
AEV70393.1
Putative xylanase/chitin deacetylase; PFAM: Cellulose binding domain; Polysaccharide deacetylase; manually curated.
  
 
 0.874
AEV69858.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.814
AEV67167.1
Hypothetical protein; Manually curated.
  
 
 0.805
AEV67525.1
Hypothetical protein; Manually curated.
  
 
 0.805
AEV69470.1
Hypothetical protein.
  
 
 0.805
AEV68069.1
Hypothetical protein.
   
 
 0.762
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
  
 
 0.664
AEV70388.1
Hypothetical protein.
  
 
 0.625
AEV66770.1
Hypothetical protein; PFAM: Tetratricopeptide repeat; manually curated.
  
  
 0.616
AEV69172.1
Hypothetical protein; PFAM: Tetratricopeptide repeat; manually curated.
  
  
 0.616
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.