Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEV70017.1PFAM: Radical SAM superfamily. (324 aa)    
Predicted Functional Partners:
AEV70018.1
Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain.
       0.773
AEV66896.1
Putative threonine efflux protein; PFAM: LysE type translocator.
  
     0.720
AEV66964.1
Putative threonine efflux protein; PFAM: LysE type translocator.
  
     0.718
AEV69484.1
Putative threonine efflux protein; PFAM: LysE type translocator.
  
     0.713
AEV69231.1
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: Phosphopantetheine attachment site; AMP-binding enzyme.
  
  
 0.604
AEV70019.1
Hypothetical protein.
       0.565
AEV67210.1
PFAM: Acetyltransferase (GNAT) family.
 
    0.552
AEV67506.1
PFAM: Prismane/CO dehydrogenase family; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit.
  
     0.552
AEV67623.1
Putative integral membrane protein; PFAM: Protein of unknown function, DUF624; manually curated.
  
     0.451
AEV67349.1
Hypothetical protein.
  
     0.435
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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