Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV70021.1PFAM: Helix-turn-helix. (108 aa)    
Predicted Functional Partners:
AEV68518.1
Hypothetical protein.
 
 
 0.626
AEV70108.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
  
   
 0.623
AEV68308.1
Hypothetical protein.
 
 
 0.612
AEV67403.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
  
   
 0.475
AEV70012.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
  
    0.435
AEV70020.1
PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
     0.428
AEV68805.1
Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain; manually curated.
  
     0.412
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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