STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV70074.1TIGRFAM: putative zinc finger/helix-turn-helix protein, YgiT family. (332 aa)    
Predicted Functional Partners:
AEV70075.1
Hypothetical protein.
 
    0.946
AEV67626.1
PFAM: Clostripain family.
  
     0.508
AEV70073.1
Hypothetical protein.
       0.483
AEV69368.1
PFAM: CotH protein.
  
     0.429
AEV68765.1
PFAM: RAMP superfamily.
  
     0.407
AEV68762.1
PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated protein; manually curated.
  
     0.406
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.