Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEV70156.1Holin, Cph1 family; PFAM: Holin family; TIGRFAM: toxin secretion/phage lysis holin. (139 aa)    
Predicted Functional Partners:
AEV70155.1
LysM domain-containing protein; PFAM: N-acetylmuramoyl-L-alanine amidase; LysM domain.
 
  
 0.830
AEV70172.1
PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
 
   
 0.815
AEV70170.1
PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family.
 
    0.810
AEV70173.1
Phage terminase-like protein, large subunit; PFAM: Phage Terminase.
 
   
 0.805
AEV70183.1
PFAM: Phage terminase, small subunit.
 
    0.768
AEV70165.1
TIGRFAM: phage major tail protein, phi13 family.
 
  
 0.762
AEV70153.1
Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain.
 
  
 0.740
AEV70171.1
Protease subunit of ATP-dependent protease; PFAM: Clp protease; Belongs to the peptidase S14 family.
 
    0.738
AEV70151.1
Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain.
 
  
 0.720
AEV70162.1
Hypothetical protein.
 
    0.717
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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