Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV70187.1Holliday junction resolvase; PFAM: VRR-NUC domain. (100 aa)    
Predicted Functional Partners:
AEV70188.1
PFAM: Bifunctional DNA primase/polymerase, N-terminal.
 
    0.866
AEV70191.1
PFAM: 3'-5' exonuclease; DNA polymerase family A.
 
    0.866
AEV70186.1
Hypothetical protein.
 
     0.860
AEV70192.1
Hypothetical protein.
 
     0.845
AEV70194.1
DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; manually curated.
 
    0.831
AEV70193.1
Hypothetical protein; Manually curated.
 
     0.827
AEV70078.1
PFAM: Bifunctional DNA primase/polymerase, N-terminal.
 
    0.784
AEV70136.1
Putative transcriptional regulator; PFAM: HTH domain.
 
    0.782
AEV70134.1
Hypothetical protein.
 
     0.718
AEV70076.1
Hypothetical protein.
 
     0.708
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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