STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV70346.1Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein. (531 aa)    
Predicted Functional Partners:
AEV67862.1
PFAM: Bacterial protein of unknown function (DUF965); Belongs to the UPF0297 family.
  
     0.675
AEV68707.1
Putative SAM-dependent methyltransferase; PFAM: Family of unknown function (DUF633).
  
     0.551
AEV70413.1
RNA polymerase, sigma 30 subunit, SigH; PFAM: Bacterial regulatory proteins, luxR family; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-H factor.
  
    0.532
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.501
polC
DNA polymerase III, alpha chain; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
    0.488
AEV68368.1
Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.487
spoVG
Uncharacterized protein, involved in the regulation of septum location; Could be involved in septation.
 
   
 0.462
AEV67073.1
PFAM: YabP family; TIGRFAM: sporulation protein YabP.
  
  
 0.438
mrnC
Hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
  
     0.431
AEV70390.1
Putative transcriptional regulator with C-terminal CBS domains; PFAM: Helix-turn-helix; Peptidase S24-like.
  
     0.408
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.