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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV70428.1PFAM: Small, acid-soluble spore proteins, alpha/beta type. (58 aa)    
Predicted Functional Partners:
AEV67860.1
HPr-related phosphotransferase system component; PFAM: PTS HPr component phosphorylation site.
  
     0.504
AEV70427.1
Hypothetical protein.
       0.488
AEV70429.1
Hypothetical protein.
       0.477
AEV68081.1
PFAM: Putative stage IV sporulation protein YqfD; TIGRFAM: sporulation protein YqfD; manually curated.
  
     0.439
AEV68670.1
PFAM: Stage III sporulation protein AC/AD protein family; TIGRFAM: stage III sporulation protein AC.
  
     0.421
AEV70355.1
Hypothetical protein.
  
     0.405
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.