STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV70463.1Putative PSP1-like protein; PFAM: PSP1 C-terminal conserved region; manually curated. (291 aa)    
Predicted Functional Partners:
rny
Hypothetical protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.888
AEV70465.1
PFAM: Protein of unknown function (DUF327).
  
  
 0.866
AEV70464.1
DNA polymerase III, delta'' subunit; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, delta' subunit; DNA polymerase III, subunit gamma and tau.
  
   0.847
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.830
AEV70467.1
PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain.
  
    0.614
fliE
PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE.
   
   0.593
AEV67058.1
PFAM: Rod binding protein.
    
   0.585
AEV68561.1
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.585
AEV70461.1
Putative O-methyltransferase; PFAM: Methyltransferase small domain; Belongs to the methyltransferase superfamily.
 
    0.573
AEV70468.1
Hypothetical protein.
       0.550
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.