Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV70500.1Hypothetical protein. (249 aa)    
Predicted Functional Partners:
AEV70499.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.784
AEV69127.1
PFAM: Bacterial regulatory proteins, tetR family.
 
   
 0.629
AEV69222.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 
 0.600
AEV70248.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 
 0.599
AEV68647.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
   
 
 0.560
AEV69126.1
Putative membrane protein; PFAM: Protein of unknown function (DUF1113).
  
     0.554
AEV69847.1
DNA-binding domain-containing protein, AraC-type; PFAM: Phosphotransferase enzyme family.
  
     0.551
AEV69231.1
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: Phosphopantetheine attachment site; AMP-binding enzyme.
  
    0.526
AEV70143.1
PFAM: Transposase.
  
     0.512
AEV67615.1
Hypothetical protein.
  
    0.505
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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