Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV70507.1PFAM: FlgN protein. (163 aa)    
Predicted Functional Partners:
AEV70508.1
PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS.
     
 0.817
AEV70451.1
Hypothetical protein; Manually curated.
  
     0.766
AEV68419.1
PFAM: Flagellar hook-length control protein FliK; manually curated.
  
     0.761
AEV68617.1
Hypothetical protein; TIGRFAM: putative membrane fusion protein.
  
     0.752
AEV67133.1
Hypothetical protein; Manually curated.
  
     0.747
AEV67337.1
Putative S-layer protein; PFAM: S-layer homology domain.
  
     0.745
AEV67880.1
Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
  
     0.725
AEV67780.1
Hypothetical protein.
  
     0.719
AEV68357.1
LysM domain-containing protein; PFAM: LysM domain.
  
     0.710
AEV70601.1
PFAM: YycH protein.
  
     0.706
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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