STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV70591.1Transposase family protein; PFAM: Transposase DDE domain. (463 aa)    
Predicted Functional Partners:
AEV67593.1
Topoisomerase-like C4 zinc finger-containing protein; PFAM: Topoisomerase DNA binding C4 zinc finger; manually curated.
  
    0.481
AEV66993.1
Hypothetical protein.
  
  
 0.442
AEV69480.1
Hypothetical protein.
  
  
 0.442
AEV66997.1
Hypothetical protein; PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: TIGR02688 family protein; conserved hypothetical protein.
  
  
 0.435
AEV69476.1
Hypothetical protein; PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: TIGR02688 family protein; conserved hypothetical protein.
  
  
 0.435
AEV70590.1
Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
       0.432
AEV70215.1
GTPase subunit of restriction endonuclease; PFAM: AAA domain (dynein-related subfamily).
   
    0.428
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.