STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV70631.1PFAM: Small, acid-soluble spore proteins, alpha/beta type. (58 aa)    
Predicted Functional Partners:
AEV68832.1
PFAM: Nucleoside recognition; TIGRFAM: sporulation integral membrane protein YlbJ.
  
     0.632
AEV68115.1
PFAM: Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M.
  
     0.539
AEV69628.1
TIGRFAM: TIGR00375 family protein.
  
     0.532
AEV68051.1
Protease subunit of ATP-dependent protease; PFAM: Clp protease.
  
     0.527
AEV70632.1
PFAM: Cell Wall Hydrolase.
       0.502
AEV68136.1
PFAM: Sporulation protein YtfJ (Spore_YtfJ); TIGRFAM: sporulation protein YtfJ; manually curated.
  
     0.478
AEV69111.1
PFAM: Small, acid-soluble spore proteins, alpha/beta type.
 
  
 0.472
AEV68671.1
PFAM: Stage III sporulation protein AB (spore_III_AB); TIGRFAM: stage III sporulation protein AB.
  
     0.468
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
     0.444
AEV70633.1
Hypothetical protein.
       0.433
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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