STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV70633.1Hypothetical protein. (150 aa)    
Predicted Functional Partners:
AEV70632.1
PFAM: Cell Wall Hydrolase.
 
    0.940
AEV70581.1
PFAM: Putative peptidoglycan binding domain; Zinc carboxypeptidase; LysM domain.
  
     0.730
AEV66813.1
TIGRFAM: germination protein YpeB.
  
     0.688
AEV70451.1
Hypothetical protein; Manually curated.
  
     0.683
AEV68147.1
Hypothetical protein.
  
     0.673
AEV70507.1
PFAM: FlgN protein.
  
     0.660
AEV68357.1
LysM domain-containing protein; PFAM: LysM domain.
  
     0.644
AEV69738.1
Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
  
     0.629
AEV69148.1
UDP-N-acetylmuramyl tripeptide synthase; PFAM: Mur ligase middle domain; manually curated.
  
     0.628
AEV69736.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
  
     0.616
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.