STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ59908.1Putative ABC transport system ATP-binding protein. (230 aa)    
Predicted Functional Partners:
SFQ32380.1
Putative ABC transport system permease protein.
  
 0.997
SFQ59917.1
Putative ABC transport system permease protein.
 
 0.980
SFQ59928.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.949
SFQ59941.1
Transcriptional regulator, TetR family.
 
 
   0.882
SFQ10788.1
Putative ABC transport system permease protein.
 0.857
SFQ59898.1
Hypothetical protein.
 
     0.846
SFQ38618.1
Lipoprotein-releasing system permease protein.
  
 0.799
SFQ82222.1
Lipoprotein-releasing system permease protein.
  
 0.799
SFQ49416.1
Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.789
macB
Macrolide transport system ATP-binding/permease protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
0.668
Your Current Organism:
Nitratireductor indicus
NCBI taxonomy Id: 721133
Other names: CCTCC AB 209298, LMG 25540, LMG:25540, MCCC 1A01260, N. indicus, Nitratireductor indicus Lai et al. 2011, strain C115, strain RC92-7
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