STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL07006.1Rubrerythrin. (323 aa)    
Predicted Functional Partners:
SHL53122.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
  
 
 0.834
SHL94292.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 
 0.834
SHK81433.1
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
    
 0.601
SHL59224.1
Molybdopterin synthase subunit MoaD.
  
 
  0.562
SHL07034.1
Hypothetical protein.
       0.554
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.534
SHL06974.1
Hypothetical protein.
       0.524
SHM33566.1
Cysteine desulfurase.
  
 
  0.498
SHK80900.1
Sulfur carrier protein ThiS.
    
  0.477
SHL11931.1
Starch phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
    
  0.469
Your Current Organism:
Bradyrhizobium lablabi
NCBI taxonomy Id: 722472
Other names: B. lablabi, Bradyrhizobium lablabi Chang et al. 2011, Bradyrhizobium sp. CCBAU 23086, Bradyrhizobium sp. CCBAU 23160, Bradyrhizobium sp. CCBAU 61434, CCBAU 23086, HAMBI 3052, LMG 25572, LMG:25572
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