STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM82458.1Type IV secretion system protein VirB4. (813 aa)    
Predicted Functional Partners:
SHM82326.1
Type IV secretion system protein VirB10.
 
 0.997
SHM82351.1
Type IV secretion system protein VirB9.
 
 
 0.997
SHM82495.1
Type IV secretion system protein VirB2.
 
 
 0.994
SHM82398.1
Type IV secretion system protein TrbL.
 
  
 0.991
SHM82437.1
P-type conjugative transfer protein TrbJ.
 
  
 0.991
SHM82475.1
Type IV secretion system protein VirB3.
 
  
 0.991
SHM82513.1
Type IV secretion system protein VirB11; Manually curated.
 
  
 0.990
SHM82372.1
Type IV secretion system protein VirB5.
 
  
 0.982
SHM82308.1
Hypothetical protein.
 
     0.899
SHM82670.1
Type IV secretion system protein VirD4.
 
  
 0.874
Your Current Organism:
Bradyrhizobium lablabi
NCBI taxonomy Id: 722472
Other names: B. lablabi, Bradyrhizobium lablabi Chang et al. 2011, Bradyrhizobium sp. CCBAU 23086, Bradyrhizobium sp. CCBAU 23160, Bradyrhizobium sp. CCBAU 61434, CCBAU 23086, HAMBI 3052, LMG 25572, LMG:25572
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.