AWZ03_014230 protein (Drosophila navojoa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Drosophila navojoa

NCBI taxonomy Id: 7232
Other names: D. navojoa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AWZ03_001760	AWZ03_009948	A0A484BUF4	A0A484B4N0	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.444
AWZ03_001760	AWZ03_014230	A0A484BUF4	A0A484ARY4	Uncharacterized protein; Belongs to the AAA ATPase family.	RRM domain-containing protein.	0.681
AWZ03_003935	AWZ03_006353	A0A484BLN3	A0A484BG37	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.481
AWZ03_003935	AWZ03_014230	A0A484BLN3	A0A484ARY4	Uncharacterized protein.	RRM domain-containing protein.	0.664
AWZ03_006173	AWZ03_014230	A0A484BI14	A0A484ARY4	RRM domain-containing protein.	RRM domain-containing protein.	0.500
AWZ03_006353	AWZ03_003935	A0A484BG37	A0A484BLN3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.481
AWZ03_006353	AWZ03_012294	A0A484BG37	A0A484AXE5	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.454
AWZ03_006353	AWZ03_013032	A0A484BG37	A0A484AXG3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]	0.707
AWZ03_006353	AWZ03_014230	A0A484BG37	A0A484ARY4	Uncharacterized protein; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.465
AWZ03_009392	AWZ03_014230	A0A484B698	A0A484ARY4	Rhodanese domain-containing protein.	RRM domain-containing protein.	0.535
AWZ03_009948	AWZ03_001760	A0A484B4N0	A0A484BUF4	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.444
AWZ03_009948	AWZ03_014230	A0A484B4N0	A0A484ARY4	Uncharacterized protein.	RRM domain-containing protein.	0.638
AWZ03_010311	AWZ03_012294	A0A484B3L6	A0A484AXE5	Uncharacterized protein.	Uncharacterized protein.	0.733
AWZ03_010311	AWZ03_013032	A0A484B3L6	A0A484AXG3	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]	0.962
AWZ03_010311	AWZ03_014230	A0A484B3L6	A0A484ARY4	Uncharacterized protein.	RRM domain-containing protein.	0.546
AWZ03_012294	AWZ03_006353	A0A484AXE5	A0A484BG37	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.454
AWZ03_012294	AWZ03_010311	A0A484AXE5	A0A484B3L6	Uncharacterized protein.	Uncharacterized protein.	0.733
AWZ03_012294	AWZ03_013032	A0A484AXE5	A0A484AXG3	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]	0.762
AWZ03_012294	AWZ03_014230	A0A484AXE5	A0A484ARY4	Uncharacterized protein.	RRM domain-containing protein.	0.716
AWZ03_013007	AWZ03_014230	A0A484AW17	A0A484ARY4	ThiF domain-containing protein.	RRM domain-containing protein.	0.815