STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWZ03_014252Uncharacterized protein. (576 aa)    
Predicted Functional Partners:
AWZ03_009243
Uncharacterized protein.
   
 0.953
AWZ03_003664
TOG domain-containing protein.
   
 0.886
AWZ03_003252
CPSF_A domain-containing protein.
   
 0.846
AWZ03_003880
Matrin-type domain-containing protein.
    
 0.811
AWZ03_008717
Uncharacterized protein.
    
 0.786
AWZ03_010455
Uncharacterized protein.
    
 0.655
AWZ03_004115
PSP domain-containing protein.
   
 0.647
snRNP-U1-C
U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.
    
 0.628
AWZ03_012465
Uncharacterized protein.
   
 0.589
AWZ03_001896
Small nuclear ribonucleoprotein Sm D3.
   
 0.583
Your Current Organism:
Drosophila navojoa
NCBI taxonomy Id: 7232
Other names: D. navojoa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.