AWZ03_014130 protein (Drosophila navojoa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AWZ03_014130

Uncharacterized protein. (176 aa)

Predicted Functional Partners:

AWZ03_001568

0.942

AWZ03_003222

0.714

AWZ03_004642

0.709

AWZ03_002688

0.709

AWZ03_013824

0.702

AWZ03_008258

0.656

AWZ03_003051

0.555

AWZ03_011085

0.527

AWZ03_014819

0.458

AWZ03_010732

0.456

Your Current Organism:

Drosophila navojoa

NCBI taxonomy Id: 7232
Other names: D. navojoa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AWZ03_001568	AWZ03_002688	A0A484BSY9	A0A484BQM2	Uncharacterized protein.	Uncharacterized protein.	0.800
AWZ03_001568	AWZ03_003222	A0A484BSY9	A0A484BNG9	Uncharacterized protein.	Uncharacterized protein.	0.972
AWZ03_001568	AWZ03_004642	A0A484BSY9	A0A484BJN3	Uncharacterized protein.	Uncharacterized protein.	0.800
AWZ03_001568	AWZ03_008258	A0A484BSY9	A0A484B9F3	Uncharacterized protein.	FHA domain-containing protein.	0.976
AWZ03_001568	AWZ03_013824	A0A484BSY9	A0A484ATR8	Uncharacterized protein.	Uncharacterized protein.	0.864
AWZ03_001568	AWZ03_014130	A0A484BSY9	A0A484ASU6	Uncharacterized protein.	Uncharacterized protein.	0.942
AWZ03_002688	AWZ03_001568	A0A484BQM2	A0A484BSY9	Uncharacterized protein.	Uncharacterized protein.	0.800
AWZ03_002688	AWZ03_004642	A0A484BQM2	A0A484BJN3	Uncharacterized protein.	Uncharacterized protein.	0.910
AWZ03_002688	AWZ03_014130	A0A484BQM2	A0A484ASU6	Uncharacterized protein.	Uncharacterized protein.	0.709
AWZ03_003051	AWZ03_010732	A0A484BQG3	A0A484B251	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.690
AWZ03_003051	AWZ03_011085	A0A484BQG3	A0A484B344	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	G domain-containing protein.	0.528
AWZ03_003051	AWZ03_014130	A0A484BQG3	A0A484ASU6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.555
AWZ03_003222	AWZ03_001568	A0A484BNG9	A0A484BSY9	Uncharacterized protein.	Uncharacterized protein.	0.972
AWZ03_003222	AWZ03_008258	A0A484BNG9	A0A484B9F3	Uncharacterized protein.	FHA domain-containing protein.	0.931
AWZ03_003222	AWZ03_014130	A0A484BNG9	A0A484ASU6	Uncharacterized protein.	Uncharacterized protein.	0.714
AWZ03_004642	AWZ03_001568	A0A484BJN3	A0A484BSY9	Uncharacterized protein.	Uncharacterized protein.	0.800
AWZ03_004642	AWZ03_002688	A0A484BJN3	A0A484BQM2	Uncharacterized protein.	Uncharacterized protein.	0.910
AWZ03_004642	AWZ03_014130	A0A484BJN3	A0A484ASU6	Uncharacterized protein.	Uncharacterized protein.	0.709
AWZ03_008258	AWZ03_001568	A0A484B9F3	A0A484BSY9	FHA domain-containing protein.	Uncharacterized protein.	0.976
AWZ03_008258	AWZ03_003222	A0A484B9F3	A0A484BNG9	FHA domain-containing protein.	Uncharacterized protein.	0.931