AWZ03_014063 protein (Drosophila navojoa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AWZ03_014063

Uncharacterized protein. (180 aa)

Predicted Functional Partners:

AWZ03_012925

0.683

AWZ03_011518

0.607

AWZ03_002916

0.600

AWZ03_007762

0.583

AWZ03_007649

0.572

AWZ03_000754

0.568

AWZ03_010754

0.548

AWZ03_003856

0.547

AWZ03_011613

0.546

AWZ03_003630

0.546

Your Current Organism:

Drosophila navojoa

NCBI taxonomy Id: 7232
Other names: D. navojoa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AWZ03_000754	AWZ03_002916	A0A484BXN1	A0A484BQY2	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	S4 RNA-binding domain-containing protein.	0.959
AWZ03_000754	AWZ03_003630	A0A484BXN1	A0A484BME8	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.991
AWZ03_000754	AWZ03_003856	A0A484BXN1	A0A484BLK9	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
AWZ03_000754	AWZ03_007649	A0A484BXN1	A0A484BB66	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	PINc domain-containing protein.	0.992
AWZ03_000754	AWZ03_007762	A0A484BXN1	A0A484BAA3	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.970
AWZ03_000754	AWZ03_010754	A0A484BXN1	A0A484B4U3	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	WD_REPEATS_REGION domain-containing protein.	0.986
AWZ03_000754	AWZ03_011518	A0A484BXN1	A0A484B2M1	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.987
AWZ03_000754	AWZ03_011613	A0A484BXN1	A0A484AZB6	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	Uncharacterized protein.	0.994
AWZ03_000754	AWZ03_012925	A0A484BXN1	A0A484AW95	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.907
AWZ03_000754	AWZ03_014063	A0A484BXN1	A0A484AVC2	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	Uncharacterized protein.	0.568
AWZ03_002916	AWZ03_000754	A0A484BQY2	A0A484BXN1	S4 RNA-binding domain-containing protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.959
AWZ03_002916	AWZ03_003630	A0A484BQY2	A0A484BME8	S4 RNA-binding domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
AWZ03_002916	AWZ03_003856	A0A484BQY2	A0A484BLK9	S4 RNA-binding domain-containing protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.961
AWZ03_002916	AWZ03_007649	A0A484BQY2	A0A484BB66	S4 RNA-binding domain-containing protein.	PINc domain-containing protein.	0.991
AWZ03_002916	AWZ03_007762	A0A484BQY2	A0A484BAA3	S4 RNA-binding domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.997
AWZ03_002916	AWZ03_010754	A0A484BQY2	A0A484B4U3	S4 RNA-binding domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.976
AWZ03_002916	AWZ03_011518	A0A484BQY2	A0A484B2M1	S4 RNA-binding domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.971
AWZ03_002916	AWZ03_011613	A0A484BQY2	A0A484AZB6	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.997
AWZ03_002916	AWZ03_012925	A0A484BQY2	A0A484AW95	S4 RNA-binding domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.922
AWZ03_002916	AWZ03_014063	A0A484BQY2	A0A484AVC2	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.600