AWZ03_012103 protein (Drosophila navojoa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AWZ03_012103

HIT-type domain-containing protein. (351 aa)

Predicted Functional Partners:

AWZ03_007939

0.821

AWZ03_005365

0.677

AWZ03_012782

0.664

AWZ03_009318

0.664

AWZ03_009001

0.627

AWZ03_011891

0.580

AWZ03_009558

0.576

AWZ03_004356

0.549

AWZ03_013836

0.545

AWZ03_002721

0.541

Your Current Organism:

Drosophila navojoa

NCBI taxonomy Id: 7232
Other names: D. navojoa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AWZ03_002721	AWZ03_004356	A0A484BR98	A0A484BKF0	G-patch domain-containing protein.	Uncharacterized protein.	0.436
AWZ03_002721	AWZ03_007939	A0A484BR98	A0A484BAH9	G-patch domain-containing protein.	Uncharacterized protein.	0.628
AWZ03_002721	AWZ03_009001	A0A484BR98	A0A484BA08	G-patch domain-containing protein.	RNA helicase.	0.692
AWZ03_002721	AWZ03_012103	A0A484BR98	A0A484AXZ1	G-patch domain-containing protein.	HIT-type domain-containing protein.	0.541
AWZ03_004356	AWZ03_002721	A0A484BKF0	A0A484BR98	Uncharacterized protein.	G-patch domain-containing protein.	0.436
AWZ03_004356	AWZ03_005365	A0A484BKF0	A0A484BJG1	Uncharacterized protein.	Protein BCCIP homolog; Belongs to the BCP1 family.	0.466
AWZ03_004356	AWZ03_007939	A0A484BKF0	A0A484BAH9	Uncharacterized protein.	Uncharacterized protein.	0.709
AWZ03_004356	AWZ03_009001	A0A484BKF0	A0A484BA08	Uncharacterized protein.	RNA helicase.	0.965
AWZ03_004356	AWZ03_011891	A0A484BKF0	A0A484AZ47	Uncharacterized protein.	RRM domain-containing protein.	0.408
AWZ03_004356	AWZ03_012103	A0A484BKF0	A0A484AXZ1	Uncharacterized protein.	HIT-type domain-containing protein.	0.549
AWZ03_005365	AWZ03_004356	A0A484BJG1	A0A484BKF0	Protein BCCIP homolog; Belongs to the BCP1 family.	Uncharacterized protein.	0.466
AWZ03_005365	AWZ03_007939	A0A484BJG1	A0A484BAH9	Protein BCCIP homolog; Belongs to the BCP1 family.	Uncharacterized protein.	0.627
AWZ03_005365	AWZ03_011891	A0A484BJG1	A0A484AZ47	Protein BCCIP homolog; Belongs to the BCP1 family.	RRM domain-containing protein.	0.572
AWZ03_005365	AWZ03_012103	A0A484BJG1	A0A484AXZ1	Protein BCCIP homolog; Belongs to the BCP1 family.	HIT-type domain-containing protein.	0.677
AWZ03_007939	AWZ03_002721	A0A484BAH9	A0A484BR98	Uncharacterized protein.	G-patch domain-containing protein.	0.628
AWZ03_007939	AWZ03_004356	A0A484BAH9	A0A484BKF0	Uncharacterized protein.	Uncharacterized protein.	0.709
AWZ03_007939	AWZ03_005365	A0A484BAH9	A0A484BJG1	Uncharacterized protein.	Protein BCCIP homolog; Belongs to the BCP1 family.	0.627
AWZ03_007939	AWZ03_009001	A0A484BAH9	A0A484BA08	Uncharacterized protein.	RNA helicase.	0.913
AWZ03_007939	AWZ03_009558	A0A484BAH9	A0A484B5T2	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.	0.961
AWZ03_007939	AWZ03_012103	A0A484BAH9	A0A484AXZ1	Uncharacterized protein.	HIT-type domain-containing protein.	0.821