STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THOM_2341ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (482 aa)    
Predicted Functional Partners:
THOM_1768
Protein required for normal rRNA processing.
   
 0.937
THOM_1733
Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily.
   
 0.884
THOM_2282
C2H2 Zn-finger protein.
    
  0.875
THOM_0839
RNA helicase.
   
 0.861
THOM_0809
Pseudouridine synthase.
  
 
 0.860
THOM_0251
Puromycin-sensitive aminopeptidase.
   
 0.860
THOM_1958
Glutathione synthetase.
   
 
 0.849
THOM_1675
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
  
 0.840
NFS1
Cysteine desulfurase, mitosomal; Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe- S) clusters in mitosomes.
  
 
  0.830
THOM_2260
Fibrillarin.
   
 
 0.828
Your Current Organism:
Trachipleistophora hominis
NCBI taxonomy Id: 72359
Other names: T. hominis
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