STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THOM_1461DNA polymerase sigma. (288 aa)    
Predicted Functional Partners:
THOM_3130
E3 ubiquitin ligase interacting with arginine methyltransferase.
   
 
 0.668
THOM_1733
Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily.
   
 
 0.650
THOM_0704
Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6).
   
 
 0.596
THOM_1387
Protein involved in cell differentiation/sexual development.
    
   0.541
THOM_0569
Nuclear transport receptor RANBP7/RANBP8 (Importin beta superfamily).
   
 
 0.414
THOM_0262
Putative helicase, DEAD-box superfamily.
    
 
 0.402
Your Current Organism:
Trachipleistophora hominis
NCBI taxonomy Id: 72359
Other names: T. hominis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.