Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
THOM_0269 | THOM_0894 | L7JZ69 | L7JXD8 | Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1. | dUTPase. | 0.549 |
THOM_0269 | THOM_1045 | L7JZ69 | L7JWY9 | Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1. | RT_RNaseH domain-containing protein. | 0.574 |
THOM_0269 | THOM_2102 | L7JZ69 | L7JU05 | Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1. | dUTPase. | 0.549 |
THOM_0442 | THOM_1045 | L7JYN4 | L7JWY9 | Nuclear pore complex, rNpl4 component (Sc Npl4). | RT_RNaseH domain-containing protein. | 0.452 |
THOM_0442 | THOM_1450 | L7JYN4 | L7JXV8 | Nuclear pore complex, rNpl4 component (Sc Npl4). | Endonuclease MUS81. | 0.925 |
THOM_0442 | THOM_1496 | L7JYN4 | L7JVQ6 | Nuclear pore complex, rNpl4 component (Sc Npl4). | 60S ribosomal protein L10A. | 0.959 |
THOM_0442 | THOM_2256 | L7JYN4 | L7JTN9 | Nuclear pore complex, rNpl4 component (Sc Npl4). | Structure-specific endonuclease ERCC1-XPF, ERCC1 component. | 0.966 |
THOM_0442 | THOM_3040 | L7JYN4 | L7JRE0 | Nuclear pore complex, rNpl4 component (Sc Npl4). | Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4. | 0.960 |
THOM_0894 | THOM_0269 | L7JXD8 | L7JZ69 | dUTPase. | Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1. | 0.549 |
THOM_0894 | THOM_1045 | L7JXD8 | L7JWY9 | dUTPase. | RT_RNaseH domain-containing protein. | 0.506 |
THOM_1045 | THOM_0269 | L7JWY9 | L7JZ69 | RT_RNaseH domain-containing protein. | Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1. | 0.574 |
THOM_1045 | THOM_0442 | L7JWY9 | L7JYN4 | RT_RNaseH domain-containing protein. | Nuclear pore complex, rNpl4 component (Sc Npl4). | 0.452 |
THOM_1045 | THOM_0894 | L7JWY9 | L7JXD8 | RT_RNaseH domain-containing protein. | dUTPase. | 0.506 |
THOM_1045 | THOM_1086 | L7JWY9 | L7JWZ1 | RT_RNaseH domain-containing protein. | Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit. | 0.630 |
THOM_1045 | THOM_1450 | L7JWY9 | L7JXV8 | RT_RNaseH domain-containing protein. | Endonuclease MUS81. | 0.473 |
THOM_1045 | THOM_1496 | L7JWY9 | L7JVQ6 | RT_RNaseH domain-containing protein. | 60S ribosomal protein L10A. | 0.447 |
THOM_1045 | THOM_2102 | L7JWY9 | L7JU05 | RT_RNaseH domain-containing protein. | dUTPase. | 0.506 |
THOM_1045 | THOM_2256 | L7JWY9 | L7JTN9 | RT_RNaseH domain-containing protein. | Structure-specific endonuclease ERCC1-XPF, ERCC1 component. | 0.473 |
THOM_1045 | THOM_2797 | L7JWY9 | L7JTC3 | RT_RNaseH domain-containing protein. | Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. | 0.612 |
THOM_1045 | THOM_3040 | L7JWY9 | L7JRE0 | RT_RNaseH domain-containing protein. | Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4. | 0.590 |
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