STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THOM_1415LTR Retrotransposon. (66 aa)    
Predicted Functional Partners:
THOM_1086
Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit.
    
 0.630
THOM_2797
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
 0.612
THOM_3040
Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4.
    
  0.590
THOM_0269
Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1.
    
 0.574
THOM_2102
dUTPase.
    
  0.506
THOM_0894
dUTPase.
    
  0.506
THOM_2256
Structure-specific endonuclease ERCC1-XPF, ERCC1 component.
    
  0.473
THOM_1450
Endonuclease MUS81.
    
  0.473
THOM_0442
Nuclear pore complex, rNpl4 component (Sc Npl4).
    
  0.452
THOM_1496
60S ribosomal protein L10A.
    
  0.447
Your Current Organism:
Trachipleistophora hominis
NCBI taxonomy Id: 72359
Other names: T. hominis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.