STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THOM_1208tRNA pseudouridine synthase. (212 aa)    
Predicted Functional Partners:
THOM_0809
Pseudouridine synthase.
  
 0.947
THOM_0407
Putative pfkB family carbohydrate kinase.
  
 
  0.801
THOM_0277
Putative Heat shock protein DnaJ, Molecular chaperone, Hsp40, DnaJ, Sec63 domain protein.
      
 0.736
THOM_1690
TRUD domain-containing protein.
   
 
 0.684
THOM_2820
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.679
THOM_2710
RNA polymerase II, subunit POLR2C/RPB3.
  
  
 0.663
THOM_0279
DNA-directed RNA polymerase.
  
  
 0.663
TRM8
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
 
 0.642
THOM_2385
tRNA(1-methyladenosine) methyltransferase, subunit GCD14.
   
  
 0.626
THOM_2584
Tyrosine--tRNA ligase.
  
 
 0.607
Your Current Organism:
Trachipleistophora hominis
NCBI taxonomy Id: 72359
Other names: T. hominis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.