STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THOM_1004RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (426 aa)    
Predicted Functional Partners:
THOM_2280
RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4.
   
 0.999
THOM_1685
RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH.
  
 0.999
THOM_1028
RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1.
    
 0.999
THOM_2664
Putative E3 ubiquitin ligase containing RING finger.
    
 0.995
THOM_2266
Transcription initiation factor IIE, alpha subunit.
   
 0.993
THOM_1162
Transcription initiation factor IIE, beta subunit.
    
 0.990
THOM_2032
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.964
THOM_2853
Transcription initiation factor TFIIB.
    
 0.962
THOM_0463
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.944
THOM_2235
Cdk activating kinase (CAK)/RNA polymerase II.
    
 0.943
Your Current Organism:
Trachipleistophora hominis
NCBI taxonomy Id: 72359
Other names: T. hominis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.