STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THOM_0489Putative snRNP core protein. (119 aa)    
Predicted Functional Partners:
THOM_2588
Small Nuclear ribonucleoprotein splicing factor.
   
 0.999
THOM_1960
Small Nuclear ribonucleoprotein splicing factor.
   
 0.999
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.999
THOM_1737
Small nuclear ribonucleoprotein (SnRNP) SMF.
   
 0.992
THOM_0499
Small nuclear ribonucleoprotein Sm D3.
   
 0.957
THOM_1134
Small Nuclear ribonucleoprotein G.
   
 0.952
THOM_0804
U1 snRNP component.
   
 0.939
THOM_2434
U5 snRNP spliceosome subunit.
    
 0.910
THOM_2018
U5 snRNP-specific protein.
    
 0.900
THOM_2148
Cell cycle control protein (Crooked neck).
    
 
 0.898
Your Current Organism:
Trachipleistophora hominis
NCBI taxonomy Id: 72359
Other names: T. hominis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.