STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THOM_0227tRNA modification enzyme. (528 aa)    
Predicted Functional Partners:
THOM_1357
tRNA uracil-5-methyltransferase, tRNA-modifying enzyme; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
  
 0.787
THOM_2385
tRNA(1-methyladenosine) methyltransferase, subunit GCD14.
   
  
 0.580
THOM_1487
Putative RNA methylase.
   
  
 0.568
THOM_1889
tRNA cytosine-5-methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.560
THOM_1033
PP-loop superfamily ATPase-like protein.
  
  
 0.537
THOM_2881
tRNA delta(2)-isopentenylpyrophosphate transferase.
   
  
 0.529
THOM_2327
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
  
  
 0.526
THOM_2534
SAM-dependent methyltransferase/cell division protein FtsJ.
   
  
 0.524
THOM_2820
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.520
THOM_1690
TRUD domain-containing protein.
   
  
 0.518
Your Current Organism:
Trachipleistophora hominis
NCBI taxonomy Id: 72359
Other names: T. hominis
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.