STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THOM_0115Vesicle coat complex COPII, GTPase subunit SAR1; Belongs to the small GTPase superfamily. Arf family. (219 aa)    
Predicted Functional Partners:
THOM_1905
Putative WD40/YVTN repeat-like-containing domain, WD40 repeat-like-containing domain protein.
   
 0.986
THOM_2063
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
    
 0.980
THOM_3128
Vesicle coat complex COPII, subunit SEC13; Belongs to the WD repeat SEC13 family.
   
 0.963
THOM_3229
Vesicle coat complex COPII, subunit SEC24/subunit SFB2.
   
 0.958
THOM_2753
Vesicle coat complex COPII, subunit SFB3.
     
 0.835
THOM_0179
SNARE protein SED5/Syntaxin 5.
    
 0.783
THOM_0226
GTPase Rab1/YPT1, small G protein superfamily.
   
 0.749
THOM_0154
Golgi SNAP receptor complex member.
   
 0.743
THOM_0881
Putative Emp24/Gp25L/p24 protein.
   
 0.711
THOM_3117
Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38.
    
  0.684
Your Current Organism:
Trachipleistophora hominis
NCBI taxonomy Id: 72359
Other names: T. hominis
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