THOM_0235 protein (Trachipleistophora hominis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THOM_0235

Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein. (196 aa)

Predicted Functional Partners:

THOM_2250

0.965

THOM_0521

0.904

THOM_0121

0.893

THOM_1071

0.886

THOM_1907

0.860

THOM_0915

0.841

THOM_1501

0.838

THOM_1764

0.837

THOM_3267

0.824

THOM_1036

0.821

Your Current Organism:

Trachipleistophora hominis

NCBI taxonomy Id: 72359
Other names: T. hominis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
THOM_0121	THOM_0235	L7JZY4	L7K090	Glycogen synthase kinase-3; Belongs to the protein kinase superfamily.	Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein.	0.893
THOM_0121	THOM_0521	L7JZY4	L7JYE7	Glycogen synthase kinase-3; Belongs to the protein kinase superfamily.	Serine/threonine protein kinase.	0.886
THOM_0121	THOM_0915	L7JZY4	L7JXG2	Glycogen synthase kinase-3; Belongs to the protein kinase superfamily.	Guanylate kinase.	0.814
THOM_0121	THOM_1036	L7JZY4	L7JY59	Glycogen synthase kinase-3; Belongs to the protein kinase superfamily.	Flavohemoprotein b5+b5R; Belongs to the cytochrome b5 family.	0.606
THOM_0121	THOM_1071	L7JZY4	L7JYY1	Glycogen synthase kinase-3; Belongs to the protein kinase superfamily.	DNA-binding cell division cycle control protein.	0.650
THOM_0121	THOM_1907	L7JZY4	L7JV65	Glycogen synthase kinase-3; Belongs to the protein kinase superfamily.	Ca2+ sensor (EF-Hand superfamily).	0.770
THOM_0121	THOM_2250	L7JZY4	L7JTM2	Glycogen synthase kinase-3; Belongs to the protein kinase superfamily.	Serine/threonine-protein phosphatase.	0.925
THOM_0121	THOM_3267	L7JZY4	L7JSV8	Glycogen synthase kinase-3; Belongs to the protein kinase superfamily.	Serine/threonine phosphatase 2C containing leucine-rich repeats.	0.813
THOM_0235	THOM_0121	L7K090	L7JZY4	Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein.	Glycogen synthase kinase-3; Belongs to the protein kinase superfamily.	0.893
THOM_0235	THOM_0521	L7K090	L7JYE7	Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein.	Serine/threonine protein kinase.	0.904
THOM_0235	THOM_0915	L7K090	L7JXG2	Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein.	Guanylate kinase.	0.841
THOM_0235	THOM_1036	L7K090	L7JY59	Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein.	Flavohemoprotein b5+b5R; Belongs to the cytochrome b5 family.	0.821
THOM_0235	THOM_1071	L7K090	L7JYY1	Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein.	DNA-binding cell division cycle control protein.	0.886
THOM_0235	THOM_1501	L7K090	L7JVN5	Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein.	Anaphase-promoting complex (APC), Cdc23 subunit.	0.838
THOM_0235	THOM_1764	L7K090	L7JUX1	Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein.	Anaphase-promoting complex (APC), Cdc16 subunit.	0.837
THOM_0235	THOM_1907	L7K090	L7JV65	Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein.	Ca2+ sensor (EF-Hand superfamily).	0.860
THOM_0235	THOM_2250	L7K090	L7JTM2	Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein.	Serine/threonine-protein phosphatase.	0.965
THOM_0235	THOM_3267	L7K090	L7JSV8	Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein.	Serine/threonine phosphatase 2C containing leucine-rich repeats.	0.824
THOM_0521	THOM_0121	L7JYE7	L7JZY4	Serine/threonine protein kinase.	Glycogen synthase kinase-3; Belongs to the protein kinase superfamily.	0.886
THOM_0521	THOM_0235	L7JYE7	L7K090	Serine/threonine protein kinase.	Ca2+/calmodulin-dependent protein phosphatase (Calcineurin subunit B), EF-Hand superfamily protein.	0.904