STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THOM_0165mRNA export protein (Contains WD40 repeats). (312 aa)    
Predicted Functional Partners:
THOM_2701
Nuclear pore protein.
   
 0.999
THOM_2598
Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170).
    
 0.999
THOM_1507
Nuclear pore complex, Nup98 component (Sc Nup145/Nup100/Nup116).
    
 0.999
THOM_3194
Nuclear pore complex, Nup98 component (Sc Nup145/Nup100/Nup116).
    
 0.962
THOM_0245
Ran-binding protein RANBP1, RanBD domain protein.
   
 0.860
THOM_0773
Uncharacterized protein.
    
 0.835
THOM_0589
DNA replication licensing factor, MCM6 component; Belongs to the MCM family.
   
 
  0.821
THOM_0462
ATP-dependent RNA helicase.
   
 0.817
THOM_3128
Vesicle coat complex COPII, subunit SEC13; Belongs to the WD repeat SEC13 family.
   
 0.791
THOM_2152
Putative starch-binding protein.
    
 
 0.762
Your Current Organism:
Trachipleistophora hominis
NCBI taxonomy Id: 72359
Other names: T. hominis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.