Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DGUA_6G007249Blast:RNA binding protein fox-1 homolog 1. (857 aa)    
Predicted Functional Partners:
DGUA_6G005147
Blast:Protein held out wings.
   
 
 0.963
DGUA_6G006175
Blast:RNA-binding protein Nova-1.
      
 0.785
DGUA_6G014234
Blast:ELAV-like protein 4.
  
 
 0.781
snRNP-U1-C
U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.
    
 
 0.777
DGUA_6G019928
Blast:Heterogeneous nuclear ribonucleoprotein F.
    
 0.703
DGUA_6G019790
Blast:Pre-mRNA-splicing factor RBM22.
    
 
 0.669
DGUA_6G018279
Blast:Protein couch potato.
   
 
 0.655
DGUA_6G018278
Blast:Protein couch potato.
   
 
 0.655
DGUA_6G018277
Blast:Protein couch potato.
   
 
 0.655
DGUA_6G014233
Uncharacterized protein.
   
 
 0.636
Your Current Organism:
Drosophila guanche
NCBI taxonomy Id: 7266
Other names: D. guanche
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