STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4K825_EUTSAUncharacterized protein. (611 aa)    
Predicted Functional Partners:
V4LF90_EUTSA
RING-type domain-containing protein.
      
 0.547
V4L102_EUTSA
RING-type domain-containing protein.
      
 0.545
V4L2I3_EUTSA
PMR5N domain-containing protein.
      
 0.545
V4N440_EUTSA
Uncharacterized protein.
  
    0.524
V4P9A4_EUTSA
BHLH domain-containing protein.
  
     0.501
V4MFK5_EUTSA
Uncharacterized protein.
  
     0.497
V4KCM3_EUTSA
Uncharacterized protein.
  
     0.488
V4JSK7_EUTSA
ZF-HD dimerization-type domain-containing protein.
  
     0.484
V4LUG1_EUTSA
BHLH domain-containing protein.
  
     0.484
V4MJP3_EUTSA
C2H2-type domain-containing protein.
  
     0.483
Your Current Organism:
Eutrema salsugineum
NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.