V4KDR0_EUTSA protein (Eutrema salsugineum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4KDR0_EUTSA

RING-type domain-containing protein. (310 aa)

Predicted Functional Partners:

V4KZC5_EUTSA

0.617

V4JZV6_EUTSA

0.560

V4K857_EUTSA

0.560

V4L3X6_EUTSA

0.560

V4LE80_EUTSA

0.560

V4LEP0_EUTSA

0.560

V4LYJ5_EUTSA

0.560

V4M1F1_EUTSA

0.560

V4MHS2_EUTSA

0.560

V4MIQ9_EUTSA

0.560

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4JZV6_EUTSA	V4KDR0_EUTSA	V4JZV6	V4KDR0	Ferredoxin--NADP reductase, chloroplastic; Belongs to the ferredoxin--NADP reductase type 1 family.	RING-type domain-containing protein.	0.560
V4K857_EUTSA	V4KDR0_EUTSA	V4K857	V4KDR0	Ferredoxin--NADP reductase, chloroplastic; Belongs to the ferredoxin--NADP reductase type 1 family.	RING-type domain-containing protein.	0.560
V4KDR0_EUTSA	V4JZV6_EUTSA	V4KDR0	V4JZV6	RING-type domain-containing protein.	Ferredoxin--NADP reductase, chloroplastic; Belongs to the ferredoxin--NADP reductase type 1 family.	0.560
V4KDR0_EUTSA	V4K857_EUTSA	V4KDR0	V4K857	RING-type domain-containing protein.	Ferredoxin--NADP reductase, chloroplastic; Belongs to the ferredoxin--NADP reductase type 1 family.	0.560
V4KDR0_EUTSA	V4KZC5_EUTSA	V4KDR0	V4KZC5	RING-type domain-containing protein.	Uncharacterized protein.	0.617
V4KDR0_EUTSA	V4L3X6_EUTSA	V4KDR0	V4L3X6	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the SIS family. GutQ/KpsF subfamily.	0.560
V4KDR0_EUTSA	V4LE80_EUTSA	V4KDR0	V4LE80	RING-type domain-containing protein.	Ferredoxin--NADP reductase, chloroplastic; Belongs to the ferredoxin--NADP reductase type 1 family.	0.560
V4KDR0_EUTSA	V4LEP0_EUTSA	V4KDR0	V4LEP0	RING-type domain-containing protein.	Uncharacterized protein.	0.560
V4KDR0_EUTSA	V4LYJ5_EUTSA	V4KDR0	V4LYJ5	RING-type domain-containing protein.	Uncharacterized protein.	0.560
V4KDR0_EUTSA	V4M1F1_EUTSA	V4KDR0	V4M1F1	RING-type domain-containing protein.	Uncharacterized protein.	0.560
V4KDR0_EUTSA	V4MHS2_EUTSA	V4KDR0	V4MHS2	RING-type domain-containing protein.	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	0.560
V4KDR0_EUTSA	V4MIQ9_EUTSA	V4KDR0	V4MIQ9	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 43 family.	0.560
V4KZC5_EUTSA	V4KDR0_EUTSA	V4KZC5	V4KDR0	Uncharacterized protein.	RING-type domain-containing protein.	0.617
V4L3X6_EUTSA	V4KDR0_EUTSA	V4L3X6	V4KDR0	Uncharacterized protein; Belongs to the SIS family. GutQ/KpsF subfamily.	RING-type domain-containing protein.	0.560
V4LE80_EUTSA	V4KDR0_EUTSA	V4LE80	V4KDR0	Ferredoxin--NADP reductase, chloroplastic; Belongs to the ferredoxin--NADP reductase type 1 family.	RING-type domain-containing protein.	0.560
V4LEP0_EUTSA	V4KDR0_EUTSA	V4LEP0	V4KDR0	Uncharacterized protein.	RING-type domain-containing protein.	0.560
V4LYJ5_EUTSA	V4KDR0_EUTSA	V4LYJ5	V4KDR0	Uncharacterized protein.	RING-type domain-containing protein.	0.560
V4M1F1_EUTSA	V4KDR0_EUTSA	V4M1F1	V4KDR0	Uncharacterized protein.	RING-type domain-containing protein.	0.560
V4MHS2_EUTSA	V4KDR0_EUTSA	V4MHS2	V4KDR0	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	RING-type domain-containing protein.	0.560
V4MIQ9_EUTSA	V4KDR0_EUTSA	V4MIQ9	V4KDR0	Uncharacterized protein; Belongs to the glycosyl hydrolase 43 family.	RING-type domain-containing protein.	0.560

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About