STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4KMK7_EUTSAProtein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (82 aa)    
Predicted Functional Partners:
V4LPH8_EUTSA
Uncharacterized protein.
   
 0.997
V4NC79_EUTSA
Uncharacterized protein.
   
 0.997
V4K8G6_EUTSA
Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.
   
 0.973
V4LSM1_EUTSA
Uncharacterized protein; Belongs to the SecY/SEC61-alpha family.
   
 0.973
V4M4U2_EUTSA
Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.
   
 0.973
V4M6Y3_EUTSA
Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.
   
 0.973
V4M317_EUTSA
Uncharacterized protein.
    
 0.944
V4KIE1_EUTSA
J domain-containing protein.
   
 
 0.941
V4LBG5_EUTSA
Uncharacterized protein.
    
 
 0.930
V4LEZ1_EUTSA
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
  
  
 
0.902
Your Current Organism:
Eutrema salsugineum
NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress
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