STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4L4D7_EUTSAUbiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (910 aa)    
Predicted Functional Partners:
V4L6W7_EUTSA
Uncharacterized protein.
   
 0.776
V4NE91_EUTSA
Uncharacterized protein.
   
   0.657
V4LED4_EUTSA
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
 
 0.594
V4LT28_EUTSA
KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.
    
 
 0.594
V4KJB8_EUTSA
AAA domain-containing protein.
    
 0.581
V4L5W0_EUTSA
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.580
V4KGW1_EUTSA
AAA domain-containing protein.
    
  0.574
V4M9E9_EUTSA
BZIP domain-containing protein.
    
  0.574
V4KHG1_EUTSA
RRM domain-containing protein; Belongs to the universal ribosomal protein uS19 family.
    
   0.573
V4L1L1_EUTSA
Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.
    
   0.573
Your Current Organism:
Eutrema salsugineum
NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress
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