STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4LAJ4_EUTSAUncharacterized protein. (907 aa)    
Predicted Functional Partners:
V4L828_EUTSA
PPC domain-containing protein.
      
 0.585
V4MBS4_EUTSA
Uncharacterized protein.
      
 0.519
V4MRG3_EUTSA
RRM domain-containing protein.
      
 0.439
V4KJ89_EUTSA
Homeobox domain-containing protein.
      
 0.438
V4MJ34_EUTSA
Uncharacterized protein; Belongs to the cyclin family.
    
 
 0.426
V4JQQ7_EUTSA
Uncharacterized protein.
      
 0.422
V4LL62_EUTSA
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
      
 0.422
V4M029_EUTSA
Uncharacterized protein.
      
 0.422
V4KI43_EUTSA
Uncharacterized protein; Belongs to the TUB family.
      
 0.420
V4L2C0_EUTSA
WAT1-related protein.
      
 0.412
Your Current Organism:
Eutrema salsugineum
NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress
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